AKfreak
150cc
Hello,
I've had similar issues mounting the dle55ra and dle61 which has the same spread out lower bolt pattern.
You'll be fine! Just cut that part of the firewall that sticks out, so it's flat. Then drill and mount.
I would mill the standoff so it has flat sides to fit the motor box. It will still hold the motor square to the motor box, without modifying the airframe.
I am sure it will work either way, but it would be easy to buy a new standoff one day, however to fix the motor box, it would be quite the chore.